PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510954.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 689aa    MW: 74984.3 Da    PI: 6.128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07273293526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ GtC++Gd C +aHg
  XP_004510954.1 273 PCPEFRK-GTCRRGDMCEYAHG 293
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.64E-196144IPR020683Ankyrin repeat-containing domain
CDDcd002043.05E-179136No hitNo description
Gene3DG3DSA:1.25.40.204.5E-209149IPR020683Ankyrin repeat-containing domain
SMARTSM002483201041IPR002110Ankyrin repeat
PfamPF127964.8E-1119126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00725888IPR002110Ankyrin repeat
PROSITE profilePS5029718.08658166IPR020683Ankyrin repeat-containing domain
SMARTSM002484.7E-593125IPR002110Ankyrin repeat
PROSITE profilePS5008812.47693128IPR002110Ankyrin repeat
PRINTSPR014151.4E-594109IPR002110Ankyrin repeat
PRINTSPR014151.4E-5112126IPR002110Ankyrin repeat
SMARTSM003567.3E-6268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31273295IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5273293IPR000571Zinc finger, CCCH-type
SMARTSM0035612303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MKTLTIDTED SFSSLLEFAS NNDIEGFKLL LDKEGASSIN EAGIWYGRQN GSKQIVLEHR  60
TPLMVAATYG SIDVMKLILS YPEADVNFAC GVNKSTALHC AASGGSVNVV DVVRLLISAG  120
ADVNCVDVNG NRPVDVIVVP PKLQGMKAVL EELLLDNASD NGSVGDFSVP VSVKSSSSGS  180
LENGTALPYS PSVSPPSPMA ELKFTEKKEY PVDPSLPDIK NSIYASDEFR MFSFKVRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG TCRRGDMCEY AHGVFECWLH  300
PAQYRTRLCK DGISCNRRVC FFAHIPEELR PLYASTGSAV PSPRSSATAL NAMDMAAAMN  360
LFPGSPSSVS SMSPSHFSQP MSPSGNSISF SNASWAQQNV PALHLPGSNL QSSRLRSSLS  420
ARDIPLEDFN VLTDFDGQQH LFNDLSCLSQ PGPGSCRSKT LTPSNLEELF SAEILSTPRY  480
SDQAMASVFS PSHKSAAMNQ FKQLQSMLSP INTNMLSPKN VDHPLLQASF GVPSSGRMSP  540
RSVEPISPMS PRMSAFVQRE KQQQQLRSIS SRDLGANNPT SVVGSPTNPW SKWGSPNGMA  600
DWSVNGDELS RQMRSASSFE HTNNGEEPDL SWVQTLVKDS SPEIIKEKFA SSGPIASADG  660
LNSNSQIESV DHSVLGAWLE QMKLDQLVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510954.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLI1M0Y00.0I1M0Y0_SOYBN; C3H-type 1 Zn transcription factor
STRINGGLYMA13G27280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain